ICA-based segmentation of sparse activated regions
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ICA-based segmentation of sparse activated regions

Patterns extracted by ICA from fMRI datasets display interpretable salient features, but also some background noise present to a varying degree in the different patterns.

../sparse_pattern_recovery.png

Segmenting the activated regions from a noisy ICA map

We introduce a paradigm-free probabilistic model of the fMRI signal based on the assumption that the interesting latent factors are spatially sparse. From this model, we show that a simple algorithm using ICA can recover sparse activated regions in the fMRI signal with an exact statistical control on specificity and sensitivity.

We shown on real fMRI data that, unlike other existing methods, this algorithm finds the same consistent regions when ran on degraded data. Also, we show that unintepretable patterns are rejected under the null hypothesis, due to the assumption of sparsity.

Software

Python code implementing this model is available on: https://github.com/GaelVaroquaux/canica

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